DNA Barcoding and Molecular Phylogeny

This book includes a multitude of aspects of DNA barcoding and molecular phylogeny along with some case studies which will be beneficial to researchers and academics around the globe in a total of 27 chapters. Bioinformatics is an important part of DNA barcoding and the concept of R in DNA Barcoding is a very recent development. This book contains a full chapter devoted to this very important topic. Further areas where DNA barcoding can be applied are: management of invasive alien species, plant animal interactions, forensic botany, clinical microbiology especially in relation to infection management, DNA database management, among others. This book also includes very useful information related to the DNA barcoding and molecular phylogeny of microbes, aquatic plants, algae, mosquitoes, elasmobranchs, fishes, reptiles, birds and ruminant mammals. Some unique case studies describe DNA barcoding of reptiles dwelling in Saudi Arabian deserts, DNA barcoding of a high altitude medicinal plant, genetic variation studies in both wild and hatchery populations of Anabas testudineus, DNA Barcoding and molecular phylogeny of Ichthyoplankton and juvenile fishes of Kuantan River in Malaysia.

Table of Contents:
DNA BARCODING AND MOLECULAR PHYLOGENY CONTENTS Section 1: DNA Barcoding: Advantages and Significance 1. DNA Barcoding Advantages and Significance SambaShiva Daravath, Reddya Naik, Tamil Selvi Manickam, and Srinivas Ankanagari 2. R in DNA Barcoding Asim Kr Mahadani, Pradosh Mahadani, Goutam Sanyal 3. Implications and utility of DNA Barcoding  J. Suriya,1* M. Krishnan,1 S. Bharathiraja,2 V. Sekar3 and V Sachithanandam3 4. Significance of DNA Barcoding in Avian species: Tracing the history and building the future Farhina Pasha 5. DNA Barcoding: A potential tool for invasive species identification Muniyandi Nagarajan* Akash Nambidi Parambath Section 2: DNA Barcoding of Microbes 6. Microbial DNA Barcoding: Prospects for Discovery and Identification Anand Mohan*1, Bableen Flora1, Madhuri Girdhar2, S. M. Bhatt3 7. DNA Barcoding on Bacteria and its Application in infection management Mohammad Zubair, Farha Fatima, Shamina Begum, Zahid Hameed Siddiqui Section 3: DNA Barcoding in Plants 8. DNA Barcoding: Implications in plant-animal interactions Muniyandi Nagarajan1* Vandana R Prabhu1, Ranganathan Kamalakkannan1 and Palatty Allesh Sinu2 9. DNA barcoding in forensic botany Mohamed Rizk Enan 10. A Molecular Assessment of Red Algae with reference to the utility of DNA Barcoding Zahid H. Siddiqui1, Zahid K. Abbas1, Khalid R. Hakeem2, Mather A. Khan3, Md. Abdul Ilah4 11. DNA Databases: Promises and Limitations for Plant DNA Barcoding Selvaraj Dhivya, Mohanasundaram Saravanan and Ramalingam Sathishkumar* 12. Aquatic Plant Biodiversity and DNA Barcoding Sufia Irfan*, Aishah Alatawi Section 4: DNA Barcoding in Animals 13. DNA barcoding of mosquito species Lalita Gupta and Sanjeev Kumar 14. DNA barcoding of Rays from South China Sea 1Akbar John, B*., 2MUHAMAD ASRUL, M.A., 4Wahidah Mohd Arshaad, 2Jalal, K.C.A. 3Hassan I. Sheikh 15. Molecular phylogeny of Elasmobranchs Pavan Kumar, A1*., Gireesh-Babu,P1., Jaiswar, A. K2., Raje, S.G3., Chaudahri,A1., and Krishna, G1. 16. A Review on DNA Barcoding on fish taxonomy in India V.Sachithanandam1,2* and P.M.Mohan2 17. Applications of DNA barcoding in fisheries Pavan-Kumar, A*., Jaiswar, A. K., Gireesh-Babu,P., Chaudahri,A., and Krishna, G. 18. Identification and conservation of reptiles through DNA Barcoding Subrata Trivedi1, Hasibur Rehman1, Shalini Saggu1, Al Thabiani Aziz1, Chellasamy Panneerselvam1, Sankar K. Ghosh2 19. DNA Barcoding in Avian species with special reference to Taxonomically-wide Biogeographic Studies Farhina Pasha 20. Molecular characterization of ruminant mammals using DNA barcodes Muniyandi Nagarajan, Nimisha K, Subhash Thomas Section 5: Case Studies 21. Phylogenetic diversity of culturable marine actinobacteria isolated from the Havelock Island, the Andamans, India Rajagopal Gobalakrishnan and Kannan Sivakumar 22. DNA Barcoding and Molecular Phylogeny of Indigenous bacteria in Fishes from a Tropical Tidal River in Malaysia Mohammad Mustafizur Rahman1,2,*, Mohd Haikal Izzuddin3, Najmus Sakib Khan3, Akbar John2, Mohd Azrul Naim3 23. DNA barcoding of Ichtyoplankton and Juvenile fishes of Tropical river in Malaysia 1Akbar John, B*., 2Hassan I. Sheikh, 1Jalal, K.C.A., 3Kamaruzzaman, B.Y., 2Sanower, H., 2Nur Hanisah, M., 3Rahman, M.H., 4Rozihan, M., 24. Genetic Variation of Wild and Hatchery Populations of Climbing Perch Anabas testudineus (Bloch 1792) in Peninsular Malaysia, using partial Gene of cytochrome b Ahmad Azfar Mohamed, Siti Waznah Abdurahman, Akbar John 25. Molecular Identification of Reptiles from Tabuk Region of Saudi Arabia through DNA barcoding: A case study Bishal Dhar1, Mohua Chakraborty1, Madhurima Chakraborty1, Subrata Trivedi2 Abdulhadi A. Aloufi2, and Sankar K. Ghosh1,3 26. Hippophae rhamnoides (Sea-buckthorn) a high altitude medicinal, adaptogenic plant; Molecular characterization and bar-coding. Shweta Saxena1, Om Prakash Chaurasia1, Ratan Kumar2 27. Closing Shots – DNA Barcoding and Molecular Phylogeny Subrata Trivedi1*, Hasibur Rehman1, Shalini Saggu1, Chellasamy Panneerselvam1, Sankar K Ghosh2

About the Author :
Dr. Subrata Trivedi completed B. Sc. (Hons) and M.Sc. from University of Calcutta, M.Phil from Jadavpur University (India) and Ph.D in Molecular Biology from Hiroshima University, Japan. He is recipient of Japanese Government (Monbusho) Scholarship, B.B.C. World Service (London) Scholarship and Scholarship from Ministry of Environment and Forests (Govt. of India). He discovered five new genes encoding vanadium binding proteins. Dr. Trivedi handled eight major projects as PI and Co-PI. He has more than 140 publications including peer reviewed research papers, conference papers, book chapters and books. He is reviewer of several journals like PLOS One, Molecular Biology Reports, Mitochondrial DNA, Tumor Biology, DNA Barcodes, etc. He is also editorial board member of several international journals and member of many international societies. He has taught in several universities and presently working as Assistant Professor in the Department of Biology, University of Tabuk.Dr. Hasibur Rehman completed M.Sc. and Ph.D from Jamia Hamdard, University, New Delhi, India in Toxicology. He served as a Staff Scientist at Center for Cell Death, Injury and Regeneration, Department of Pharmaceutical & Biomedical Sciences, Medical University of South Carolina, Charleston, SC, USA His research interests are on the mechanisms of cell injury, death and regeneration, with foci on the roles of free radicals and mitochondrial function in liver and kidney diseases and development of novel therapeutics to prevent injury and accelerate the regeneration/repair processes. Dr. Rehman handled several major projects as PI and Co-PI. He has more than 150 publications including peer reviewed research papers, conference papers, book chapters and books. He is reviewer of several journals like, Food and Chemical Toxicology, Chemosphere, Toxicology, PLOS One, Frontiers of Gastrointestinal Pharmacology, etc. He is also editorial board member of several international journals and member of many international societies. He has taught in several universities and presently working as an Assistant Professor in the Department of Biology, University of Tabuk, Saudi Arabia. Dr. Shalini Saggu completed her M.Sc. and Ph.D from Jamia Hamdard, University, New Delhi, India in Toxicology. She served as a Postdoctoral fellow at University of Louisville, KY, USA, later she joined as a Staff Scientist at Center for Cell Death, Injury and Regeneration, Department of Pharmaceutical & Biomedical Sciences, Medical University of South Carolina, Charleston, SC, USA. Her research interest to investigate the mechanisms of cell injury and cell death in various pathological settings, mostly related to cancer. Specifically, interested in treating skin cancers with photodynamic therapy. Dr. Saggu handled several major projects as PI and Co-PI. She has more than 90 publications including peer reviewed research papers, conference papers, book chapters and books. She is reviewer of several journals like Toxicology, Food and Chemical Toxicology, Toxicology Letters etc. She is also editorial board member of several international journals and member of many international societies. Presently, she is working as an Assistant Professor in the Department of Biology, University of Tabuk, Saudi Arabia. Dr. Chellasamy Panneerselvam is an Assistant Professor in the Department of Biology at the University of Tabuk. He has more than 5 years of experience in R&D related to phytochemistry and nanomaterials for insect pest management. He obtained his B.Sc., M.Sc and M. Phil degrees from Madurai Kamaraj University, India and Ph.D degree from Bharathiar University, India. He has won gold medal for best Ph.D thesis in Zoology. He worked as UGC-Post-Doctoral fellow (PDF) and Senior Research Fellow (SRF) at DRDO-BU Campus and has published over 75 peer-reviewed papers, 10 Book Chapters. He is peer-reviewer of many International Reputed Journals including Chemosphere, Acta Tropica, Plant Physiology and Biochemistry, Journal of Photochemistry and Photobiology B: Biology etc., He completed 2 major projects. Prof. Sankar K. Ghosh (FNASc) currently serves as Vice-Chancellor of Kalyani University, India. He did his MVSc, PhD from Bose Institute, India. He served as Dean at School of life Sciences, Assam University, India. He worked as a postdoctoral fellow at Lerner Research Institute, Cleveland United States. Prof. Ghosh is a scientist, an institution builder, policy maker, and an administrator. He is well known internationally for his research on DNA Barcoding and Bioinformatics and has >250 publications in peer-reviewed journals of high impact.