Mass Spectrometry Data Analysis in Proteomics
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Mass Spectrometry Data Analysis in Proteomics: (367 Methods in Molecular Biology)

Mass Spectrometry Data Analysis in Proteomics: (367 Methods in Molecular Biology)


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About the Book

The intention of "Mass Spectrometry Data Analysis in Proteomics" is to support researchers in deciding which programs to use in various tasks related to analysis of mass spectrometry data in proteomics. The chapters give a precise description of the theoretical background of each topic followed by accurate descriptions of programs and the parameters best suited for different cases.

Table of Contents:
Mass Spectrometry Data Analysis in Proteomics; 1. Introduction: Data types in proteomics.; Rune Matthiesen and Kudzai E. Mutenda; 2. Extracting monoisotopic single charges peaks from LC-ESI-MS/MS data with VEMS.; Rune Matthiesen; 3. Calibration of MALDI-TOF PMF spectra.; Karin Hjerno and Peter Hojrup; 4. Protein identification by Peptide Mass Fingerprinting.; Karin Hjerno; 5. Generating Unigene collections of EST sequences for use in MS identification; Jeppe Emmersen; 6. Protein identification by tandem mass spectrometry and sequence database searching.; Alexey I. Nesvizhskii; 7. VEMS an integrated tool for proteome analysis.; Rune Matthiesen; 8. Quantitation with VEMS.; Albrecht Gruhler and Rune Matthiesen; 9. Sequence handling by: Sequence Analysis Toolbox version 1.0; Christian Ravnsborg Rune Matthiesen Ole Norregaard Jensen; 10. Interpretation of collision induced fragmentation tandem mass spectra of post-translationally modified peptides.; Jakob Bunkenborg and Rune Matthiesen; 11. Retention time prediction and protein identification.; Magnus Palmblad; 12. Quantitative Proteomics by Stable Isotope Labeling and Mass Spectrometry.; Sheng Pan. 13. Quantitative Proteomics for Two-Dimensional Gels Using Difference Gel Electrophoresis (DIGE).; David B. Friedman, PhD, Mass Spectrometry; 14. Proteomic Data Exchange and Storage - using Proteios; Per Garden and Rikard Alm; 15. Proteomic Data Exchange and Storage - the Need for Common Standards and Public Repositories; Sandra Orchard, Philip Jones, Chris Taylor, Weimin Zhu, Randall K. Julian, Jr., Henning Hermjakob, Rolf Apweiler; 16. Organisation of Proteomics Data; Allan L. Thomsen, Kris Laukens, Rune Matthiesen, Ole Norregaard Jensen; 17. Analysis of carbohydrates by Mass spectrometry.; Kudzai Mutenda and Rune Matthiesen; 18. Useful MS programs freely available on the internet; Commercial Programs; Rune Matthiesen; 19. Appendices.


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Product Details
  • ISBN-13: 9781597452755
  • Publisher: Humana Press Inc.
  • Publisher Imprint: Humana Press Inc.
  • Language: English
  • ISBN-10: 1597452750
  • Publisher Date: 01 Oct 2010
  • Binding: Digital (delivered electronically)
  • Series Title: 367 Methods in Molecular Biology


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Mass Spectrometry Data Analysis in Proteomics: (367 Methods in Molecular Biology)
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Mass Spectrometry Data Analysis in Proteomics: (367 Methods in Molecular Biology)
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